Mô đun:Cite taxon
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require('strict')local p = {}local data = {} local templateArgs = {} -- contains arguments passed to cite weblocal target = {} -- short cut to target table, e.g. fishbase, cof, etclocal function firstToUpper(str) return (str:gsub("^%l", string.upper))end-- define citation template and custom parameters for various sources--####################### Default functions ##########################data.default = {}-- currently being tested on Avibase, but Fossilworks, Tropicos, FNA and a few others are candidatesdata.default.id = function (id, source) local title = id local url = source.customArgs['baseURL'] .. (source.customArgs['searchStr'] or "") .. id return title, urlenddata.default.error = function() return "Minimal requirement is two of id, url and title parameters"enddata.default.search = function (search, source) local title = "Search for " .. search local url = source.customArgs['baseURL'] .. source.customArgs['searchString'] .. search .. source.customArgs['searchSuffix'] return title, urlend--[[ handling for ID only (unused, original concept) p.genericIdCitation = function(frame, title, url) if not templateArgs['id'] then return "no id parameter detected" end templateArgs['url']= target.CustomArgs['baseURL'] .. target.CustomArgs['searchStr'] .. templateArgs['id'] return p.citeWeb(frame, title, url)end]]--####################### FISH #####################################--======================== Fishbase =================================data.fishbase = { citationArgs = { ['editor1-last']="Froese", ['editor1-first']="Rainer", ['editor1-link']="Rainer Froese", ['editor2-last']="Pauly", ['editor2-first']="Daniel", --['last-author-amp'] ="yes", ['website'] = "[[Fishbase]]", --['publisher'] = "" }, customArgs = { exclude= "order, family,genus, species, subspecies, 1, 2, 3, 4", baseURL = "http://www.fishbase.org/", defaultTitle = "Search FishBase" },}data.fishbase.species = function(genus, species, subspecies) local title = genus .. " " .. species local url = data.fishbase.customArgs['baseURL'] .. "summary/SpeciesSummary.php?genusname=" .. genus .. "&speciesname=" .. species if subspecies then url = url .. "+" .. subspecies title = title .. " " .. subspecies end title = "''" .. title .. "''" return title, urlenddata.fishbase.genus = function(genus) local title = "Species in genus ''" .. firstToUpper(genus) .. "''" local url = data.fishbase.customArgs['baseURL'] .. "identification/SpeciesList.php?genus=" .. genus return title, urlenddata.fishbase.order = function(order) local title = "Order " .. firstToUpper(order) local url = data.fishbase.customArgs['baseURL'] .. "Summary/OrdersSummary.php?order=" .. order return title, urlenddata.fishbase.family = function(family) local title = "Family " .. firstToUpper(family) local url = data.fishbase.customArgs['baseURL'] .. "Summary/FamilySummary.php?family=" .. family return title, urlenddata.fishbase.error = function() return "No recognised taxon options: order, family, genus, species, subspecies."enddata.fishbase.custom = function() --TODO decide what to do with default date local version = "April 2006 version" -- Should we have a default (probably not) if templateArgs['month'] then version = templateArgs['month'] end if templateArgs['year'] then version = templateArgs['year'] .. " version" end if templateArgs['month'] then version = templateArgs['month'] .. " " .. version end templateArgs['version'] = versionend--================================ Catalog of Fishes ================================================data.cof = { citationArgs = { --baseURL = "http://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatget.asp?", ['editor1-last']="Eschmeyer", ['editor1-first']="William N.", ['editor1-link']="William N. Eschmeyer", ['editor2-last']="Fricke", ['editor2-first']="Ron", ['editor3-last']="van der Laan", ['editor3-first']="Richard", ['name-list-style'] ="amp", ['website'] = "[[Catalog of Fishes]]", ['publisher'] = "[[California Academy of Sciences]]" }, customArgs = { exclude= "family,genus,species,genid,spid,id,list,1,2,3", baseURL = "http://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatget.asp?", defaultTitle = "CAS - Eschmeyer's Catalog of Fishes" }}data.cof.species = function(genus, species, subspecies) local taxon = genus .. " " .. species local url = data.cof.customArgs['baseURL'] .. 'tbl=species&genus=' .. genus .. '&species=' .. species local title = "Species related to " .. "''" .. firstToUpper(taxon) .. "''" -- .. "" species synonyms" return title, urlenddata.cof.genus = function(genus) local url = data.cof.customArgs['baseURL'] .. 'tbl=species&genus=' .. genus local title = "Species in the genus ''" .. firstToUpper(genus) .. "''" return title, urlend -- note the family works with subfamilies using &family=SUBFAMILYdata.cof.family = function(family) local list = templateArgs['list'] or "genus" local url = data.cof.customArgs['baseURL'] .. 'tbl=' .. list .. '&family=' .. family local title = "Species" if list == "genus" then title = "Genera" end title = title .. ' in the family ' .. firstToUpper(family) return title, urlenddata.cof.genid = function(genid) local searchStr = "genid" .. '=' .. genid local title = searchStr local url = data.cof.customArgs['baseURL'] .. searchStr return title, urlenddata.cof.spid = function(spid) local searchStr = "spid" .. '=' .. spid local title = searchStr local url = data.cof.customArgs['baseURL'] .. searchStr return title, urlenddata.cof.error = function() return "Error. No recognised option set by template (need one of family, genus, species (also requires genus), spid, or genid"end--======================Fishes of the World 5=============================== data.fotw5 = { citeTemplate = "Cite book", citationArgs = { --['website'] = "[[]]", first1 = "Joseph S.", last1 = "Nelson", first2="Terry C.", last2="Grande", first3="Mark V. H.", last3="Wilson", --work = "Fishes of the World (work)", title = "Fishes of the World", edition="5th", year = 2016, publisher ="John Wiley and Sons", location="Hoboken", isbn = "978-1-118-34233-6", doi="10.1002/9781119174844" , }, customArgs = {exclude="gb-page,q,dq,1", baseURL = "https://onlinelibrary.wiley.com/doi/book/10.1002/9781119174844", -- online library defaultTitle = "Fishes of the World", altTitle = "[[Fishes of the World]]", -- wikilinked for when using chapter/section title altURL = "https://sites.google.com/site/fotw5th/", -- classification }, GoogleBooks = { baseURL = "https://books.google.co.uk/books?id=", id = "E-MLDAAAQBAJ", defaultPage = "&pg=PP1" }}data.fotw5.default2 = function(targs) local title = data.fotw5.citationArgs['work'] local url = data.fotw5.customArgs['baseURL'] local chapterParams = { title = title, ['chapter-url']= data.fotw5.customArgs['googleBooks'] } --return title, url, chapterParamsenddata.BentonVP4 = { citeTemplate = "Cite book", citationArgs = { first1 = "Michael J.", last1 = "Benton", title = "Vertebrate Palaeontology", edition="4th", year = 2014, publisher ="John Wiley & Sons", isbn = "978-1-118-40764-6", }, customArgs = {exclude="gb-page,q,dq,1", --baseURL = "", defaultTitle = "Vertebrate Palaeontology", altTitle = "[[Vertebrate Palaeontology]]" -- wikilinked for when using chapter/section title }, GoogleBooks = { baseURL = "https://books.google.co.uk/books?id=", id = "qak-BAAAQBAJ", defaultPage = "&pg=PP1", }}--====================TODO FishWisePro================================================== data.fishwisepro = { citationArgs = { ['website'] = "[[FishWisePro]]", }, customArgs = {exclude="family,genus,species,1", baseURL = "" }}-- #################### AMPHIBIA and REPTILES ###############################-- ================= Amphibian Species of the World (ASW6)--[[Recommended citation: Frost, Darrel R. 2019. Amphibian Species of the World: an Online Reference. Version 6.0 (Date of access). Electronic Database accessible at http://research.amnh.org/herpetology/amphibia/index.html. American Museum of Natural History, New York, USA. URL for family page: http://research.amnh.org/vz/herpetology/amphibia/Amphibia/Anura/Allophrynidae baseURL = http://research.amnh.org/vz/herpetology/amphibia/ suffix = Amphibia/Anura/Allophrynidae note: needs the whole hierarchy (except the superfamily which is optional) Template for main taxonomic listing: {{BioRef|ASW6 |title=Amphibia |year=2019 |url=http://research.amnh.org/herpetology/amphibia/index.html |access-date=27 September 2019}} SEARCH http://research.amnh.org/vz/herpetology/amphibia/amphib/basic_search?basic_query=Atelopus&stree=&stree_id= searchSuffix = amphib/basic_search?basic_query=Atelopus&stree=&stree_id= SEARCH http://research.amnh.org/vz/herpetology/amphibia/content/search?taxon=Allophryn*&subtree=&subtree_id=&english_name=&author=&year=&country= searchSuffix = /content/search?taxon=Allophryn*&subtree=&subtree_id=&english_name=&author=&year=&country= minimul = /content/search?taxon=Allophryn*&subtree ]]data.ASW6 ={ citationArgs = { website ="Amphibian Species of the World, an Online Reference.", version = "Version 6.0", publisher = "American Museum of Natural History, New York", ['last1']="Frost", ['first1']="Darrel R.", ['author1-link']="Darrel R. Frost", }, customArgs = { exclude = "taxon,species,genus,family, superfamily,1,2,3", baseURL = "http://research.amnh.org/herpetology/amphibia/", defaultSuffix = "index.html", defaultTitle = "ASW Home" }}data.ASW6.species = function(genus, species, subspecies) -- search for genus+species () local title = "Search for taxon: " .. "''" .. genus .. " " .. species .. "''" --local search = ""?action=names&taxon="" -- old version (pre ASW6) --local search = "amphib/basic_search?basic_query=" -- basic search local search = "content/search?taxon=" -- guided search for taxon name local url = data.ASW6.customArgs['baseURL'] .. search -- .. genus .. '+AND+' .. species .. '"' .. genus .. '+' .. species .. '"' return title, urlenddata.ASW6.genus = function(genus) return data.ASW6.taxon(genus) -- use genus as alias of taxonenddata.ASW6.taxon = function(taxon) local title = "Search for Taxon: " .. taxon local url= data.ASW6.customArgs['baseURL'] .. "content/search?taxon=" .. taxon return title, urlenddata.ASW6.family = function(family) local order = data.ASW6.checkOrder(family) local url= data.ASW6.customArgs['baseURL'] .. "Amphibia/" .. order .. "/" .. firstToUpper(family) local title = firstToUpper(family) return title, urlenddata.ASW6.checkOrder = function(family) local gymnophiona={ "Caeciliidae", "Chikilidae", "Dermophiidae", "Herpelidae", "Ichthyophiidae", "Grandisoniidae", "Indotyphlidae", "Rhinatrematidae", "Scolecomorphidae", "Siphonopidae", "Typhlonectidae" } local caudata = { "Ambystomatidae", "Amphiumidae", "Cryptobranchidae", "Hynobiidae", "Plethodontidae", "Proteidae", "Rhyacotritonidae", "Salamandridae", "Sirenidae" } for k,v in pairs(caudata) do if v == family then return "Caudata" end end for k,v in pairs(gymnophiona) do if v == family then return "Gymnophiona" end end return "Anura"end --============================= AmphibiaWeb ===================================--[[ Citation: AmphibiaWeb. 2019. <https://amphibiaweb.org> University of California, Berkeley, CA, USA. Accessed 27 Sep 2019. Code: {{BioRef|amphibiaweb |title=Amphibia |year=2019 |url=https://amphibiaweb.org/taxonomy/AW_FamilyPhylogeny.html |access-date=27 September 2019}}--]]data.amphibiaweb = { citationArgs = { website = "AmphibiaWeb", publisher = "University of California, Berkeley", --['editor1-last']="", ['editor1-first']="", ['editor1-link']="", }, customArgs = { exclude = "taxon,species,genus,family,1,2,3", baseURL = "https://amphibiaweb.org/", defaultSuffix = "taxonomy/AW_FamilyPhylogeny.html", defaultTitle = "AmphibiaWeb Family Taxonomy" }}data.amphibiaweb.species = function (genus, species, subspecies) local title = "''" .. genus .. " " .. species .. "''" --https://amphibiaweb.org/cgi/amphib_query?where-genus=Altiphrynoides&where-species=malcolmi local url = data.amphibiaweb.customArgs['baseURL'] .. "cgi/amphib_query?rel-genus=equals&where-genus=" .. genus .. "&rel-species=equals&where-species=" .. species return title, urlenddata.amphibiaweb.genus = function (genus) local title = "''" .. genus .. "''" --https://amphibiaweb.org/cgi/amphib_query?where-genus=Altiphrynoides&where-species=malcolmi local url = data.amphibiaweb.customArgs['baseURL'] .. "cgi/amphib_query?rel-genus=equals&where-genus=" .. genus .. "&include_synonymies=Yes&show_photos=Yes" return title, urlend data.amphibiaweb.family = function (family) -- if family use standardised url local url = data.amphibiaweb.customArgs['baseURL'] .. "lists/" .. firstToUpper(templateArgs['family']) .. ".shtml" local title = templateArgs['family'] return title, urlend --=========================== The Reptile Databasedata.reptileDB = { -- http://reptile-database.reptarium.cz/species?genus=Epacrophis&species=boulengeri -- recommended citation: Uetz, P., Freed, P. & Hošek, J. (eds.) (2019) The Reptile Database, http://www.reptile-database.org, accessed [insert date here] citationArgs = { --website="reptile-database.org", website="[[The Reptile Database]]", ['editor1-last']="Uetz", ['editor1-first']="P.", --['editor1-link']="Peter Uetz", ['editor2-last']="Freed", ['editor2-first']="P.", ['editor3-last']="Hošek", ['editor3-first']="J.", --year=2019 }, customArgs = { exclude = "taxon,species,genus,family,1,2,3", baseURL = "http://reptile-database.reptarium.cz/" }}data.reptileDB.species = function(genus, species) local title = "''" .. genus .. " " .. species .. "''" --http://reptile-database.reptarium.cz/species?genus=Loxocemus&species=bicolor local url = data.reptileDB.customArgs['baseURL'] .. "species?genus=" .. genus .. "&species=" .. species return title, urlenddata.reptileDB.genus = function(genus) local title = "''" .. genus .. "''" --http://reptile-database.reptarium.cz/advanced_search?genus=Malayopython&submit=Search local url = data.reptileDB.customArgs['baseURL'] .. "advanced_search?genus=" .. genus .. "&exact%5B0%5D=taxon&submit=search" return title, urlenddata.reptileDB.family = function(family) return data.reptileDB.taxon(family)enddata.reptileDB.order = function(order) return data.reptileDB.taxon(order)enddata.reptileDB.taxon = function(taxon) local title = taxon --http://reptile-database.reptarium.cz/advanced_search?taxon=Viperidae&exact%5B0%5D=taxon&submit=Search local url = data.reptileDB.customArgs['baseURL'] .. "advanced_search?taxon=" .. taxon .. "&exact%5B0%5D=taxon&submit=search" return title, urlend --################################### BIRDS ########################################--====================Handbook of the Birds of the World Alive (HBW Alive)==============data.HBWalive = { citationArgs = { website="[[Handbook of the Birds of the World|Handbook of the Birds of the World Alive]]", publisher="Lynx Edicions" }, customArgs = { exclude="order,family,genus,species,taxon,id,1", baseURL = "https://www.hbw.com/", defaultSuffix = "family/home", defaultTitle = "Family | HBW Alive" }}--############################## HBW ALIVE ######################################### -- family and species entries have mix of common name and taxon name so cannot be prempted; -- must use title + url (which uses default functions in this module)data.HBWalive.order = function(order) local title = "Order " .. firstToUpper(order) --https://www.hbw.com/order/struthioniformes local url = target.customArgs['baseURL'] .. "order/" .. order return title, urlend --[[======================IOC World Bird List========================== Gill, F & D Donsker (Eds). 2019. IOC World Bird List (v9.2). doi : 10.14344/IOC.ML.9.2. Gill F, D Donsker & P Rasmussen (Eds). 2020. IOC World Bird List (v10.2). doi : 10.14344/IOC.ML.10.1.]]data.IOC = { citationArgs = { website="[[IOC World Bird List]]", -- version="Version 9.2", -- shouldn't default; should be hardcode so it doesn't change ['editor1-last']="Gill", ['editor1-first']="F.", ['editor1-link']="Frank Gill (ornithologist)", ['editor2-last']="Donsker", ['editor2-first']="D.", ['editor3-last']="Rasmussen", ['editor3-first']="P.", -- TODO only show from version 10.1 onwards -- doi = "10.14344/IOC.ML.9.2", -- this changes by version number and is not a useful part of the cictation publisher="International Ornithological Congress" }, customArgs = { exclude="order,family,genus,species,taxon,id,1", baseURL = "https://www.worldbirdnames.org/", defaultSuffix = "", defaultTitle = "IOC World Bird List: Welcome" },}data.IOC.version = function() local version = templateArgs['version'] local old = false if version then version = string.gsub( version, "[Vv]ersion ", "") local versionNumber = tonumber(version) if versionNumber < 10.1 then old = true end else local Date = require('Module:Date')._Date if Date(templateArgs['access-date']) < Date('1 January 2020') then old = true end end if old then data.IOC.citationArgs['editor3-last'] = nil data.IOC.citationArgs['editor3-first'] = nil endenddata.IOC.order = function(order) data.IOC.version() local IOCorders = {Struthioniformes='ratites',Rheiformes='ratites',Apterygiformes='ratites',Casuariiformes='ratites',Tinamiformes='ratites',Galliformes='megapodes',Anseriformes='waterfowl',Caprimulgiformes='nightjars',Apodiformes='swifts',Musophagiformes='turacos',Otidiformes='turacos',Cuculiformes='turacos',Mesitornithiformes='turacos',Pterocliformes='turacos',Columbiformes='pigeons',Gruiformes='flufftails',Podicipediformes='grebes',Phoenicopteriformes='grebes',Charadriiformes='sandpipers',Eurypygiformes='loons',Phaethontiformes='loons',Gaviiformes='loons',Sphenisciformes='loons',Procellariiformes='loons',Ciconiiformes='storks',Suliformes='storks',Pelecaniformes='pelicans',Opisthocomiformes='raptors',Accipitriformes='raptors',Strigiformes='owls',Coliiformes='mousebirds',Leptosomiformes='mousebirds',Trogoniformes='mousebirds',Bucerotiformes='mousebirds',Coraciiformes='rollers',Piciformes='woodpeckers',Cariamiformes='falcons',Falconiformes='falcons',Psittaciformes='parrots', Passeriformes='nz_wrens'} -- passeriformes link not very useful local title = "Order " .. firstToUpper(order) local url = data.IOC.customArgs['baseURL'] .. "/bow/" .. IOCorders[order] return title, url enddata.IOC.family = function(family) data.IOC.version() local IOCfamilies = { Struthionidae = {"ratites", 4}, Alcippeidae = {"babblers", 24989 } } -- temporary partial list for testing local title = "Family " .. firstToUpper(family) --https://www.worldbirdnames.org/Family/Struthionidae local url = data.IOC.customArgs['baseURL'] .. "Family/" .. family -- old version (might be resurrected by IOC) -- https://www.worldbirdnames.org/new/bow/babblers/#1338626516R24989 if IOCfamilies[family] then -- test version local partial list url = data.IOC.customArgs['baseURL'] .. "new/bow/" .. IOCfamilies[family][1] .. "/#1338626516R" .. IOCfamilies[family][2] end return title, urlend data.IOC.default = function( title, url) data.IOC.version() return title, urlenddata.BOW = { citationArgs = { website="Birds of the World Online", -- doi = "", -- ['last1']="Winkler", ['first1']="David W.", -- are these always the authors in version 1? no, perhaps for family page -- ['last2']="Billerman", ['first2']="Shawn M.", -- ['last3']="Lovette", ['first3']="Irby J.", -- ['editor1-last']="Billerman", ['editor1-first']="S. M.", --['editor1-link']="", -- ['editor2-last']="Keeney", ['editor2-first']="B. K.", -- ['editor3-last']="Rodewald", ['editor3-first']="P. G.", -- ['editor4-last']="Schulenberg", ['editor4-first']="T. S.", -- ['version'] = 1, ['year'] = 2020, -- may not want to default publisher="[[Cornell Lab of Ornithology]], Ithaca, NY." }, customArgs = { exclude="citation,make,order,family,genus,species,taxon,id,1", baseURL = "https://birdsoftheworld.org/bow/species/", defaultSuffix = "", defaultTitle = "Explore Taxonomy" },}-- function not needed of not adding anything elsedata.BOW.default2 = function( title, url) --data.BOW.citationArgs['version'] = "Version 1" mw.addWarning("testing BOW.default function") return title, urlend-- id works with the default function data.default.id (id, source)data.BOW.id2 = function( id) local url = data.IOC.customArgs['baseURL'] ..id local title = "BOW id=" .. id end--[[ make BOW to parse standard citation, {{BioRef|BOW|citation=CITATION}} vesrion 1 (family): Winkler, D. W., S. M. Billerman, and I.J. Lovette (2020). Bulbuls (Pycnonotidae), version 1.0. In Birds of the World (S. M. Billerman, B. K. Keeney, P. G. Rodewald, and T. S. Schulenberg, Editors). Cornell Lab of Ornithology, Ithaca, NY, USA. https://doi.org/10.2173/bow.pycnon4.01 version 2 (species): Limparungpatthanakij , W. L., L. Fishpool, and J. Tobias (2020). Buff-vented Bulbul (Iole crypta), version 2.0. In Birds of the World (S. M. Billerman and B. K. Keeney, Editors). Cornell Lab of Ornithology, Ithaca, NY, USA. https://doi.org/10.2173/bow.buvbul1.02]]data.BOW.citation = function( value) local citation = templateArgs['citation'] data.BOW.citationArgs['year'] = citation:match ('^%D+(%d%d%d%d)') data.BOW.citationArgs['doi'] = citation:match ('10%.2173/bow%..+') -- https://doi.org/10.2173/bow.pycnon4.01 --data.BOW.citationArgs['version'] = citation:match ('version %d%.%d') -- version applies to page, not whole BOW local title = citation:match ('%d%d%d%d%)%.(.*, version %d%.%d)'); -- include version number in title local suffix = citation:match ('10%.2173/bow%.(.+%d)%.'); -- https://doi.org/10.2173/bow.pycnon4.01 local version = "/cur/" -- for the current version version = citation:match ('version (%d%.%d)') -- for the cited version local url = data.BOW.customArgs['baseURL'] .. suffix .. '/' .. version .. '/' title = title:gsub( '%((%D+) (%D+)%)' , "(''%1 %2'')") local authors = citation:match ('^(%D+) %(%d%d%d%d%)') if authors then -- split authors with modified code from make cite iucn local list = {} --mw.addWarning ("author string: " .. authors) authors = authors:gsub(", and ", ", ") -- for 3 or more authors authors = authors:gsub(" and ", ", ") -- for 2 editors list = mw.text.split (authors, ','); -- split the string on the commas into entries in list if #list == 0 then mw.addWarning ("Zero length author list. Please report example of BOW citation at Cite BOW template talk page."); data.BOW.citationArgs['author'] = authors -- no 'names' of the proper form; return the original as a single |author= parameter else for i, name in ipairs (list) do -- for each author in list if i==1 then --note the first name has last name followed by initials after comma, so takes fill first two parts of the split data.BOW.citationArgs['last1'] = name elseif i==2 then data.BOW.citationArgs['first1'] = name elseif i > 2 then data.BOW.citationArgs['last'..i-1] = name:match ('%s(%a-)$') data.BOW.citationArgs['first'..i-1] = name:match ('(.+)%s%a-$') --data.BOW.citationArgs['author'..i-1] = nil else -- something has gone wrong (use author) data.BOW.citationArgs['author'..i-1] = name end if i>1 and 1==2 then mw.addWarning ("last" .. tostring(i-1) .. "=" .. data.BOW.citationArgs['last'..i-1]) mw.addWarning ("first".. tostring(i-1) .. "=" .. data.BOW.citationArgs['first'..i-1]) end end end end -- now parse editors local editors = citation:match ('In Birds of the World %((.-), Editors?%)' ) -- omit editors as cite web psoitioning is weird if editors then -- split editors with modified code from make cite iucn local list = {} --mw.addWarning ("editor string: " .. editors) editors = editors:gsub(", and ", ", ") -- for 3 or more authors editors = editors:gsub(" and ", ", ") -- for 2 editors list = mw.text.split (editors, ','); -- split the string on the commas into entries in list if #list == 0 then mw.addWarning ("problem with editor splitting") data.BOW.citationArgs['editor'] = editors -- no 'names' of the proper form; return the original as a single |author= parameter else for i, name in ipairs (list) do -- for each author in list if i>0 then --note the editor names are all same format (unlike authors) data.BOW.citationArgs['editor-last'..i] = name:match ('%s(%a-)$') data.BOW.citationArgs['editor-first'..i] = name:match ('(.+)%s%a-$') --data.BOW.citationArgs['editor'..i-1] = nil else -- something has gone wrong (use editor)-- data.BOW.citationArgs['editor'..i] = name end if i>0 and 1==2 then mw.addWarning ("editor-last" .. tostring(i) .. "=" .. data.BOW.citationArgs['editor-last'..i]) mw.addWarning ("editor-first".. tostring(i) .. "=" .. data.BOW.citationArgs['editor-first'..i]) end end end end --if not url then url = data.BOW.customArgs['baseURL'] end --if not title then title = "Title parameter required" end return title, urlend-- basic handling for Taxonomy in Flux websitedata.tif = { citationArgs = { website="Taxonomy in Flux", ['editor1-last']="Boyd III", ['editor1-first']="John H.", --['editor1-link']="", }, customArgs = { exclude="order,family,genus,species,taxon,id,1", baseURL = "http://jboyd.net/Taxo/", defaultSuffix = "List.html", defaultTitle = "Taxonomy in Flux" },}--[[ ------------- Avibase e.g. https://avibase.bsc-eoc.org/species.jsp?avibaseid=9144EF4017F2D8B1]]data.avibase = { citationArgs = { website="Avibase", ['editor1-last']="Lepage", ['editor1-first']="Denis", --['editor1-link']="", }, customArgs = { exclude="order,family,genus,species,taxon,id,1", baseURL = "https://avibase.bsc-eoc.org/", searchStr = "species.jsp?avibaseid=", defaultTitle = "Avibase - The World Bird Database" }}--[[ use default functiondata.avibase.id = function (id) local title = "Avibase id: " .. id local url = data.avibase.customArgs['baseURL'] .. data.avibase.customArgs['searchStr'] .. id return title, urlend--]]-- ============================= IUCN =================================================-- for species in taxon; for species assessments, us {{cite iucn}}-- https://www.iucnredlist.org/search?query=Murexia&searchType=species -- https://www.iucnredlist.org/search?query=aonyx&searchType=speciesdata.iucn = { citationArgs = { website="[[IUCN Red List of Threatened Species]]", --publisher="[[IUCN]]" }, customArgs = { exclude="family,genus,species,taxon,id,1", baseURL = "https://www.iucnredlist.org", searchString = "/search?query=", searchSuffix = "&searchType=species", defaultSuffix = "", defaultTitle="IUCN Red List of Threatened Species" } }data.iucn.genus = function(genus) return data.iucn.taxon(genus, "TITLE_ITALICS") enddata.iucn.family = function(family) return data.iucn.taxon(family) enddata.iucn.order = function(order) return data.iucn.taxon(order) enddata.iucn.taxon = function(taxon, titleItalics) local title = firstToUpper(taxon) if titleItalics then title = "''" .. title .. "''" end local url = data.iucn.customArgs['baseURL'] .. data.iucn.customArgs['searchString'] .. taxon .. data.iucn.customArgs['searchSuffix'] return title, urlend -- ============================= ASM Mammal Diversity Database ========================data.asm = { citationArgs = { website="ASM Mammal Diversity Database", publisher="[[American Society of Mammalogists]]" }, customArgs = { exclude="family,genus,species,taxon,id,1,2,3", baseURL = "https://www.mammaldiversity.org/", defaultTitle="ASM Mammal Diversity Database" }}data.asm.species2 = function(genus, species) -- use species function below -- old url = https://mammaldiversity.org/species-account.php?genus=ursus&species=arctos -- new url = https://www.mammaldiversity.org/explore.html#genus=Dipodomys&species=deserti&id=1001892 (only id required) local title = "''" .. genus .. " " .. species .. "''" local url = data.asm.customArgs['baseURL'] .. "explore.html#genus=" .. genus .. "&species=" .. species if templateArgs['id'] then url = url .. "&id=" .. templateArgs['id'] end return title, urlend data.asm.id = function(id) --local url = data.asm.customArgs['baseURL'] .. "species-account/species-id=" .. templateArgs['id'] -- new format https://www.mammaldiversity.org/explore.html#species-id=1006310 --local url = data.asm.customArgs['baseURL'] .. "explore.html#species-id=" .. id -- templateArgs['id'] -- newer format https://www.mammaldiversity.org/explore.html#genus=Leopardus&species=colocola&id=1005993 (genus and species can be blank) -- newer (Mar 2024) https://www.mammaldiversity.org/taxon/1006020 local title = "Species-id=" .. id local hashString = "genus=&species=&id=" .. id -- if id only, requires blank genus and species (superceded by /taxon/link) if templateArgs['genus'] and templateArgs['species'] then title = "''" .. templateArgs['genus'] .. " " .. templateArgs['species'] .. "'' (id=" .. id ..")" hashString = "genus=" .. templateArgs['genus'] .. "&species=" .. templateArgs['species'] .. "&id=" .. id end --local url = data.asm.customArgs['baseURL'] .. "explore.html#genus=&species=&id=" .. id -- templateArgs['id'] -- url = data.asm.customArgs['baseURL'] .. "explore.html#" .. hashString local url = data.asm.customArgs['baseURL'] .. "taxon/" .. id return title, urlenddata.asm.species = function(genus, species) if templateArgs['id'] then return data.asm.id(templateArgs['id']) -- use the ASM explore page if ID given (as permalink) end if genus and species then -- otherwisee use the treeview page with the species info local title = "''" .. firstToUpper(genus) .. " " .. species .. "''" local url = data.asm.customArgs['baseURL'] .. "tree.html#genus=" .. genus .. "&species=" .. species return title, url end enddata.asm.genus = function(genus) return data.asm.taxon(genus, "genus", "TITLE_ITALICS") enddata.asm.family = function(family) return data.asm.taxon(family, "family") enddata.asm.order = function(order) return data.asm.taxon(order, "order") enddata.asm.taxon = function(taxon, rank, titleItalics) --https://mammaldiversity.org/#ZmVsaWRhZSZnbG9iYWxfc2VhcmNoPXRydWUmbG9vc2U9dHJ1ZQ -- Base64.encode(felidae&global_search=true&loose=true) local title = firstToUpper(taxon) if titleItalics then title = "''" .. title .. "''" end local url = data.asm.customArgs['baseURL'] .. "tree.html" if rank then -- no rank if taxon called directly url = url .. "#" .. rank .. "=" .. taxon end return title, urlend --############################## Base64 encode and decode (used for ASM#####################local b='ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz0123456789+/'-- encodingdata.asm.Base64 = {}data.asm.Base64.encode = function(data) return ((data:gsub('.', function(x) local r,b='',x:byte() for i=8,1,-1 do r=r..(b%2^i-b%2^(i-1)>0 and '1' or '0') end return r; end)..'0000'):gsub('%d%d%d?%d?%d?%d?', function(x) if (#x < 6) then return '' end local c=0 for i=1,6 do c=c+(x:sub(i,i)=='1' and 2^(6-i) or 0) end return b:sub(c+1,c+1) end)..({ '', '==', '=' })[#data%3+1])end-- decodingdata.asm.Base64.decode=function(data) data = string.gsub(data, '[^'..b..'=]', '') return (data:gsub('.', function(x) if (x == '=') then return '' end local r,f='',(b:find(x)-1) for i=6,1,-1 do r=r..(f%2^i-f%2^(i-1)>0 and '1' or '0') end return r; end):gsub('%d%d%d?%d?%d?%d?%d?%d?', function(x) if (#x ~= 8) then return '' end local c=0 for i=1,8 do c=c+(x:sub(i,i)=='1' and 2^(8-i) or 0) end return string.char(c) end))end--######################## Misc ##################################--[[ 3 approaches to handling DB: 1) use DB as website and use author for editors (if known) (a) use via to append WoRMS (b) use postscript to append WoRMs (c) use publisher for WoRMS 2) use WoRMS as website and designate DB as author (recommended by WoRMS) CURRENT (option) add editors [TODO see cite WoRMS for list] issue: what to do about editors changing (need to use access-date)]]data.WoRMS = { citationArgs = { author = "WoRMS", website = "[[World Register of Marine Species]]", --['via'] = "[[World Register of Marine Species]]", --postscript = ' from the [[World Register of Marine Species]].' }, customArgs = {exclude="id,db,1", baseURL = "http://www.marinespecies.org/aphia.php?", searchStr = "p=taxdetails&id=", defaultTitle="World Register of Marine Species" }}data.WoRMS.id = function(id) --[[ Two styles 1. http://www.marinespecies.org/aphia.php?p=taxdetails&id=14712 > WoRMS (2018). Heterobranchia. Accessed at: http://marinespecies.org/aphia.php?p=taxdetails&id=14712 on 2018-11-28 2. http://www.marinespecies.org/aphia.php?p=taxdetails&id=1057249 > MolluscaBase (2018). Ringipleura. Accessed through: World Register of Marine Species at: http://www.marinespecies.org/aphia.php?p=taxdetails&id=1057249 on 2018-11-28 ]] if not templateArgs['id'] then return "no id parameter detected" end local searchStr = "p=taxdetails&id=" .. templateArgs['id'] if templateArgs['db'] then data.WoRMS.db (templateArgs['db']) --[[else -- WoRMS is primary source (note cite WoRMs uses WoRMS as publisher and the db as the work) templateArgs['via'] = nil templateArgs['postscript'] = nil]] end --templateArgs['website'] = templateArgs['db'] -- alternative (and use |postscript) --templateArgs['publisher'] = templateArgs['via'] --page <title>WoRMS - World Register of Marine Species - Heterobranchia</title> local title = "WoRMS taxon details: AphiaID " .. id local url = data.WoRMS.customArgs['baseURL'] .. data.WoRMS.customArgs['searchStr'] .. id return title, url enddata.WoRMS.default = function() if templateArgs['db'] then data.WoRMS.db (templateArgs['db']) endenddata.WoRMS.db = function(db) -- if database hosted by WoRMS db = string.lower( db ) if db == "world of copepods database" or db == "copepoda" or db == "copepods" or db == "copepod" then templateArgs['author'] = "World of Copepods Database" templateArgs['editor-last1']="Walter"; templateArgs['editor-first1']="T.C." templateArgs['editor-last2']="Boxshall"; templateArgs['editor-first2']="G." -- year ? (2022). elseif db == "world amphipoda database" or db == "amphipoda" or db == "amphipod"then templateArgs['author'] = "World Amphipoda Database" templateArgs['editor-last1']="Horton"; templateArgs['editor-first1']="T." templateArgs['editor-last2']="Lowry"; templateArgs['editor-first2']="J." templateArgs['editor-last3']="De Broyer"; templateArgs['editor-first3']="C." templateArgs['display-editors']="etal"; -- full list is about 20 names elseif db == "world isopoda database" or db == "isopoda" or db == "isopod"then templateArgs['author'] = "World Marine, Freshwater and Terrestrial Isopod Crustaceans database" templateArgs['editor-last1']="Boyko"; templateArgs['editor-first1']="C.B." templateArgs['editor-last2']="Bruce"; templateArgs['editor-first2']="N.L." templateArgs['editor-last3']="Hadfield"; templateArgs['editor-first3']="K.A." templateArgs['editor-last4']="Merrin"; templateArgs['editor-first4']="K.L." templateArgs['editor-last5']="Ota."; templateArgs['editor-first5']="Y." templateArgs['editor-last6']="Poore"; templateArgs['editor-first6']="G.C.B." templateArgs['editor-last7']="Taiti"; templateArgs['editor-first7']="S." elseif db == "millibase" or db == "diplopoda" or db == "diplopod"then templateArgs['author'] = "MilliBase" templateArgs['editor-last1']="Sierwald"; templateArgs['editor-first1']="P." templateArgs['editor-last2']="Spelda"; templateArgs['editor-first2']="J." elseif db == "molluscabase" or db == "mollusca" or db == "mollusc" then templateArgs['author'] = "MolluscaBase" else templateArgs['author'] = templateArgs['db'] -- this is recommended by WoRMS endend--[[ Species files -- takes db parameter --https://db.speciesfile.org/otus/$ID/overview --https://plecoptera.speciesfile.org/otus/890815/overview]]data.speciesfile = { citationArgs = { website = " Species File", --publisher = "", }, customArgs = {exclude="id,1,2,3,4,5,db", --baseURL = "https://" .. firstToUpper(templateArgs['db'] ) .. ".speciesfile.org/", --searchStr = "otus/", -- defaultSuffix = "/overview", --defaultTitle= " Species File" }}data.speciesfile.id = function(id) -- e.g. https://plecoptera.speciesfile.org/otus/890815/overview local db = data.speciesfile.db() -- customise for speciesfile local title = firstToUpper(db) .. " Species File id=" .. id --local url = data.speciesfile.customArgs['baseURL'] .. data.speciesfile.customArgs['searchStr'] .. id .. data.speciesfile.customArgs['defaultSuffix '] local url = "https://" ..db .. ".speciesfile.org/otus/" .. id .. "/overview" return title, url enddata.speciesfile.default = function() local db = data.speciesfile.db () local title = firstToUpper(db) .. " Species File" local url = "https://" ..db .. ".speciesfile.org/" return title, url enddata.speciesfile.db = function() local db = string.lower( templateArgs['db'] ) templateArgs['editor-last1']="Hopkins"; templateArgs['editor-first1']="H." if db == "zoraptera" then -- ed: Hopkins, H. templateArgs['editor-last1']="Hopkins"; templateArgs['editor-first1']="H." elseif db == "dermaptera" then -- eds: Hopkins, H., Haas, F. & Deem, L.S. templateArgs['editor-last1']="Hopkins"; templateArgs['editor-first1']="H." templateArgs['editor-last2']="Johnson"; templateArgs['editor-first2']="K.P." templateArgs['editor-last3']="Smith"; templateArgs['editor-first3']="V.S." elseif db == "plecoptera" then -- (eds) DeWalt RE, Hopkins H, Neu-Becker U, and Stueber G templateArgs['editor-last1']="DeWalt"; templateArgs['editor-first1']="R.E." templateArgs['editor-last2']="Hopkins"; templateArgs['editor-first2']="H." templateArgs['editor-last3']="Neu-Becker"; templateArgs['editor-first3']="U." templateArgs['editor-last4']="Stueber"; templateArgs['editor-first4']="G." elseif db == "orthoptera " then --eds: Cigliano, M.M., H. Braun, D.C. Eades & D. Otte. templateArgs['editor-last1']="Cigliano"; templateArgs['editor-first1']="M.M." templateArgs['editor-last2']="Braun"; templateArgs['editor-first2']="H." templateArgs['editor-last3']="Eades"; templateArgs['editor-first3']="D.C." templateArgs['editor-last4']="Otte"; templateArgs['editor-first4']="D." elseif db == "grylloblattodea" then -- ed: Hopkins, H. templateArgs['editor-last1']="Hopkins"; templateArgs['editor-first1']="H." elseif db == "mantophasmatodea" then -- ed: Hopkins, H. templateArgs['editor-last1']="Hopkins"; templateArgs['editor-first1']="H." elseif db == "embioptera" then -- ed: Hopkins, H. templateArgs['editor-last1']="Hopkins"; templateArgs['editor-first1']="H." elseif db == "phasmida" then -- eds: Brock PD, Büscher TH, Baker E. templateArgs['editor-last1']="Brock"; templateArgs['editor-first1']="P.D." templateArgs['editor-last2']="Büscher"; templateArgs['editor-first2']="T.H." templateArgs['editor-last3']="Baker"; templateArgs['editor-first3']="E." elseif db == "mantodea" then -- not updated yet elseif db == "cockroach" then -- ed: Beccaloni, G.W. templateArgs['editor-last1']="Beccaloni"; templateArgs['editor-first1']="G.W." elseif db == "isoptera" then -- ed: Hopkins, H. templateArgs['editor-last1']="Hopkins"; templateArgs['editor-first1']="H." elseif db == "psocodea" then --eds: Hopkins, H., Johnson, K.P., & Smith, V.S. templateArgs['editor-last1']="Hopkins"; templateArgs['editor-first1']="H." templateArgs['editor-last2']="Johnson"; templateArgs['editor-first2']="K.P." templateArgs['editor-last3']="Smith"; templateArgs['editor-first3']="V.S." elseif db == "aphid" then -- ed: Colin FAVRET templateArgs['editor-last1']="Favret"; templateArgs['editor-first1']="Colin" elseif db == "coleorrhyncha" then -- ed: Hopkins, H. templateArgs['editor-last1']="Hopkins"; templateArgs['editor-first1']="H." elseif db == "coreoidea" then -- not updated yet elseif db == "lygaeoidea" then -- eds: Dellapé, Pablo M. & Thomas J. Henry templateArgs['editor-last1']="Dellapé"; templateArgs['editor-first1']="Pablo M." templateArgs['editor-last2']="Henry"; templateArgs['editor-first2']="Thomas J." elseif db == "hoppers" then -- eds: Dmitriev, D.A., Anufriev, G.A., Bartlett, C.R., Blanco-Rodríguez, E., Borodin, Oleg I., Cao, Y.-H., Deitz, L.L., Dietrich, C.H., Dmitrieva, M.O., El-Sonbati, S.A., Evangelista de Souza, O., Gjonov, I.V., Gonçalves, A.C., Hendrix, S., McKamey, S., Kohler, M., Kunz, G., Malenovský, I., Morris, B.O., Novoselova, M., Pinedo-Escatel, J.A., Rakitov, R.A., Rothschild, M.J., Sanborn, A.F., Takiya, D.M., Wallace, M.S., Zahniser, J.N. templateArgs['editor-last1']="Dmitriev"; templateArgs['editor-first1']="D.A." templateArgs['editor-last2']="Anufriev"; templateArgs['editor-first2']="G.A." templateArgs['editor-last3']="Bartlett"; templateArgs['editor-first3']="C.R." templateArgs['display-editors']="etal"; -- full list is about 28 names else --return "Species File database not recognised" end if db == "hoppers" then data.speciesfile.citationArgs['website'] = "World Auchenorrhyncha Database" else data.speciesfile.citationArgs['website'] = firstToUpper(db) .. data.speciesfile.citationArgs['website'] end return dbend--[[ ITIS - Integrated Taxonomic Information System https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=95601#null]]data.itis = { citationArgs = { website = "[[Integrated Taxonomic Information System]]", --publisher = "", }, customArgs = {exclude="id,1,2,3,4,5", baseURL = "https://www.itis.gov/", searchStr = "servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=", defaultTitle="Integrated Taxonomic Information System" }}data.itis.id = function(id) local title = "ITIS id=" .. id local url = data.itis.customArgs['baseURL'] .. data.itis.customArgs['searchStr'] .. id return title, url end--[[ Catalogue of Life: Roskov Y., Ower G., Orrell T., Nicolson D., Bailly N., Kirk P.M., Bourgoin T., DeWalt R.E., Decock W., van Nieukerken E.J., Penev L. (eds.) (2020). Species 2000 & ITIS Catalogue of Life, 2020-12-01. Digital resource at www.catalogueoflife.org. Species 2000: Naturalis, Leiden, the Netherlands. ISSN 2405-8858. Species 2000 & ITIS Catalogue of Life, 2020-12-01. Digital resource at www.catalogueoflife.org. Species 2000: Naturalis, Leiden, the Netherlands. ISSN 2405-8858.]]data.col = { db = "col", -- need rethink this citationArgs = { --author = "Catalogue of Life", --['editor-last1'] = "Roskov", ['editor-first1'] = "Y.", ['editor-last2'] = "Ower", ['editor-first2'] = "G.", ['editor-last3'] = "Orrell", ['editor-first3'] = "T.", ['editor-last4'] = "Nicolson", ['editor-first4'] = "D.", ['editor-last5'] = "Bailly", ['editor-first5'] = "N.", ['editor-last6'] = "Kirk", ['editor-first6'] = "P.M.", ['editor-last7'] = "Bourgoin", ['editor-first7'] = "T.", ['editor-last8'] = "DeWalt", ['editor-first8'] = "R.E.", ['editor-last9'] = "Decock", ['editor-first9'] = "W.", ['editor-last10'] = "van Nieukerken", ['editor-first10'] = "E.J.", ['editor-last11'] = "Penev", ['editor-first11'] = "L.", --website = "[[Catalogue of Life]]", --website = "[[Catalogue of Life|Species 2000 & ITIS Catalogue of Life]]", -- website = "[[Species 2000]] & [[ITIS]] [[Catalogue of Life]]", website = "[[Catalogue of Life]]", publisher = "[[Species 2000]]: Leiden, the Netherlands", --others = "Species 2000 & ITIS" }, customArgs = {exclude="id,db,1,2,3,4,5,legacy,option", baseURL = "https://www.catalogueoflife.org/data/", searchStr = "browse?taxonKey=", defaultTitle="Catalogue of Life" }}data.col.id = function(id) --[[ Catalogue of Life browse option: https://www.catalogueoflife.org/data/browse?taxonKey=4JQ8 use id for taxoKey taxon option https://www.catalogueoflife.org/data/taxon/6HR5M ]] local title = "Catalogue of Life taxonKey " .. id local url = data.col.customArgs['baseURL'] -- some new CoL are numbers e.g. 64553 in https://www.catalogueoflife.org/data/taxon/64553 if not tonumber(id) and string.find( id, "^[0-9abcdef]+$" ) then -- if old-style id local year = "2019" -- last old-style version available if templateArgs['version'] and string.find( templateArgs['version'], "^%d%d%d%d$" ) then --if version specied year = templateArgs['version'] end if templateArgs['option'] == "browse" then url = "http://www.catalogueoflife.org/annual-checklist/" .. year .. "/browse/tree/id/" .. id else -- default to option=taxon url = "http://www.catalogueoflife.org/annual-checklist/" .. year .. "/details/species/id/" .. id end else -- else use current version if templateArgs['option'] == "browse" then url = url .. "browse?taxonKey=" .. id else -- default to option=taxon url = url .. "taxon/" .. id end end return title, url end--[[ current links https://www.catalogueoflife.org/data/search?q=" Chinchilla+chinchilla&type=EXACT legacy links with redirect Species pages: http://www.catalogueoflife.org/col/details/species/id/12dca9c49741815f82400bb7bff50553 Species searches: http://www.catalogueoflife.org/col/search/all/key/Dracula+antonii/ old-style links http://www.catalogueoflife.org/col/details/species/id/7539827da517bd6273a4a3836578cb24 http://www.catalogueoflife.org/col/search/scientific/genus/Chinchilla/species/chinchilla/match/1/ http://www.catalogueoflife.org/col/browse/tree/id/003e480e646d0e7647ab67efc1218197 year specific links 2019 http://www.catalogueoflife.org/annual-checklist/2019/details/species/id/7539827da517bd6273a4a3836578cb24 http://www.catalogueoflife.org/annual-checklist/2019/search/all/key/Chinchilla+chinchilla/fossil/1/match/1 http://www.catalogueoflife.org/annual-checklist/2019/search/scientific/genus/Chinchilla/species/chinchilla/match/1/ ? http://www.catalogueoflife.org/annual-checklist/2016/browse/tree?6d600f4985f19b1207d41d847424edd0 ? http://www.catalogueoflife.org/col/browse/tree/id/003e480e646d0e7647ab67efc1218197 browse http://www.catalogueoflife.org/annual-checklist/2019/browse/tree/id/003e480e646d0e7647ab67efc1218197 ]]data.col.default = function(mode) -- this handles the old style template with positional parameters (mode unused?) local para1 = templateArgs[2] local para2 = templateArgs[3] local para3 = templateArgs[4] local para4 = templateArgs[5] if para1 then para1 = mw.text.trim(para1) end if para2 then para2 = mw.text.trim(para2) end if para3 then para3 = mw.text.trim(para3) end if para4 then para4 = mw.text.trim(para4) end local title, url if para1 then --local match = "7539827da517bd6273a4a3836578cb24" local match = "^[0-9abcdef]+$" if string.find( para1, match ) then url = "http://www.catalogueoflife.org/col/details/species/id/" .. para1 -- ""Old style id" --url ="https://www.catalogueoflife.org/data/search?q=" .. para1 if para2 then title = para2 else title = "Oldstyle id: " .. para1 end else --https://www.catalogueoflife.org/data/search?q=" Chinchilla+chinchilla&type=EXACT if para1 ~= "" then url = "https://www.catalogueoflife.org/data/search?q=" .. para1 title = "''" .. para1 if para2 then url = url .. "+" .. para2 title = title .. " " .. para2 end url = url .. "&type=EXACT" title = title .. "''" end end if para3 then title = title .. " " .. para3 end -- add authority if para4 == "nv" then templateArgs['trans-title'] = "synonym" end -- if nv add [synonym]. Note that this parameter is not used to add COinS metadata else -- no parameter 1 end return title, url end--====================== Fossilworks =======================================data.fossilworks = { citationArgs = { website="[[Fossilworks]]", agency="Gateway to the [[Paleobiology Database]]", --publisher="Paleobiology Database", --postscript = 'none', -- postscript = " from the [[Paleobiology Database]].", -- gives maintenance warning --via="''fossilworks.org''" -- an alternative format to using |website= }, customArgs = { exclude = "id,collection,date,1", baseURL = "http://www.fossilworks.org/cgi-bin/", searchStr ="bridge.pl?a=taxonInfo&taxon_no=", defaultTitle = "Fossilworks: Gateway to the Paleobiology Database" } --id = function(id) return p.genericIdCitation (frame, title, url)}data.fossilworks.id = function(id)--[[ http://fossilworks.org/cgi-bin/bridge.pl?a=taxonInfo&taxon_no=83087 if not templateArgs['id'] then return "no id parameter detected" end local searchStr = "bridge.pl?a=taxonInfo&taxon_no=" .. templateArgs['id'] templateArgs['url']= target.CustomArgs['baseURL'] .. searchStr ]] local title = "PaleoDB taxon number: " .. id local url = data.fossilworks.customArgs['baseURL'] .. data.fossilworks.customArgs['searchStr'] .. id return title, url enddata.fossilworks.collection = function(collection) -- http://fossilworks.org/bridge.pl?a=collectionSearch&collection_no=20072 local title = "PaleoDB collection number: " .. collection local url = data.fossilworks.customArgs['baseURL'] .. "bridge.pl?a=collectionSearch&collection_no=" .. collection return title, url enddata.fossilworks.error = function() return "Requires id and title parameters"end--====================== Paleobiology Database: paleobiodb.org =======================================data.paleobiodb = { citationArgs = { website="[[Paleobiology Database]]" }, customArgs = { exclude = "id,collection,date,1", baseURL = "https://paleobiodb.org/classic/", searchStr ="basicTaxonInfo?taxon_no=", defaultTitle = "Paleobiology Database" } --id = function(id) return p.genericIdCitation (frame, title, url)}data.paleobiodb.id = function(id)--[[ https://paleobiodb.org/classic/basicTaxonInfo?taxon_no=22786 if not templateArgs['id'] then return "no id parameter detected" end ]] local title = "PaleoDB taxon number: " .. id local url = data.paleobiodb.customArgs['baseURL'] .. data.paleobiodb.customArgs['searchStr'] .. id return title, url enddata.paleobiodb.collection = function(collection) -- https://paleobiodb.org/classic/basicCollectionSearch?collection_no=24193 local title = "PaleoDB collection number: " .. collection local url = data.paleobiodb.customArgs['baseURL'] .. "basicCollectionSearch?collection_no=" .. collection return title, url enddata.paleobiodb.error = function() return "Requires id and title parameters"end--======================================= PLANTS =========================--[[ Plant authorities can end in a period. This is stripped by the citation templates. This function encloses titles ending in such authorities in double parentheses, i.e. ((title)) ]]local addAuthority = function(formattedTaxonName) if templateArgs['authority'] then local title = formattedTaxonName .. " " .. templateArgs['authority'] return string.gsub( title, "(.*%.)$", "((%1))") -- if authority ends in "." enclose ((title)) to prevent removal end return formattedTaxonNameend--[[ Hassler, Michael (2004 - 2020): World Plants. Synonymic Checklist and Distribution of the World Flora. Version x.xx; last update xx.xx.xxxx. - www.worldplants.de. Last accessed dd/mm/yyyy. https://www.worldplants.de/world-plants-complete-list/complete-plant-list#1599996425 Hassler, Michael (2004 - 2020): World Ferns. Synonymic Checklist and Distribution of Ferns and Lycophytes of the World. Version x.xx; last update xx.xx.xxxx. - www.worldplants.de/ferns/. Last accessed dd/mm/yyyy. https://www.worldplants.de/world-ferns/ferns-and-lycophytes-list#1599997555 deeplinks: Genus: [https://www.worldplants.de?deeplink=Helosciadium-Koch ''Helosciadium''] Species: [https://www.worldplants.de?deeplink=Helosciadium-longipedunculatum ''Helosciadium longipedunculatum''] Genus: [https://www.worldplants.de?deeplink=Lycopodium-L. ''Lycopodium''] Species: [https://www.worldplants.de?deeplink=Lycopodium-clavatum ''Lycopodium clavatum'']--]]data.worldplants = { citationArgs = { last1 = "Hassler", first1 = "Michael", website="World Plants. Synonymic Checklist and Distribution of the World Flora.", --publisher="" }, customArgs = { exclude = "id,authority,family,genus,species,1", baseURL = "https://www.worldplants.de", searchStr ="/world-plants-complete-list/complete-plant-list#", defaultSuffix = "", defaultTitle = "World Plants" }}data.worldplants.genus = function(genus) local title = addAuthority("''" .. genus .. "''") local genusString = genus if templateArgs['authority'] then genusString = genus .. "-" .. templateArgs['authority'] end local url = data.worldplants.customArgs['baseURL'] .. "?deeplink=" .. genusString return title, url enddata.worldplants.species = function(genus, species) local title = addAuthority("''" .. genus .. " " .. species .. "''") local url = data.worldplants.customArgs['baseURL'] .. "?deeplink=" .. genus .. "-" .. species .. " " .. (templateArgs['authority'] or "") return title, url end--[[ experimental, don't leave live data.worldplants.taxon = function(taxon) local title = taxon .. " " .. (templateArgs['authority'] or "") local url = data.worldplants.customArgs['baseURL'] .. "?deeplink=" .. taxon return title, url enddata.worldplants.family = function(family) local title = family .. " " .. (templateArgs['authority'] or "") local url = data.worldplants.customArgs['baseURL'] .. "?deeplink=" .. family return title, url end--]]data.worldferns = { citationArgs = { last1 = "Hassler", first1 = "Michael", website="World Ferns. Synonymic Checklist and Distribution of the World Flora.", --publisher="" }, customArgs = { exclude = "id,authority,family,genus,species,1", baseURL = "https://www.worldplants.de/", searchStr ="world-ferns/ferns-and-lycophytes-list?name=", defaultSuffix = "", defaultTitle = "World Ferns" }}data.worldferns.genus = function(genus) local title = addAuthority("''" .. genus .. "''") local genusString = genus if templateArgs['authority'] then genusString = genus .. "-" .. templateArgs['authority'] end local url = data.worldferns.customArgs['baseURL'] .. data.worldferns.customArgs['searchStr'] .. genusString return title, url enddata.worldferns.species = function(genus, species) local title = addAuthority("''" .. genus .. " " .. species .. "''") local url = data.worldferns.customArgs['baseURL'] .. data.worldferns.customArgs['searchStr'] .. genus .. "-" .. species .. " " .. (templateArgs['authority'] or "") return title, url end--[[Plants of the World online http://powo.science.kew.org/taxon/urn:lsid:ipni.org:names:30003057-2 -- use id http://powo.science.kew.org/?q=Selaginellaceae -- use search http://powo.science.kew.org/?family=Selaginellaceae -- can also use family= [gets same result as q=] http://powo.science.kew.org/?genus=Selago -- or genus http://powo.science.kew.org/?genus=Selago&species=abietina -- or genus + species http://powo.science.kew.org/?genus=Selago&f=accepted_names -- filter for accepted names http://powo.science.kew.org/?genus=Selago&f=genus_f -- filter for genus (no species selected) http://powo.science.kew.org/?genus=Selago&f=genus_f%2Caccepted_names -- filter for genus and accepted names http://powo.science.kew.org/?page.size=480&f=family_f%2Caccepted_names -- list of accepted families -- all these searches get the search result (no apparent way to target the article when unique)]]data.POWO = { citationArgs = { website="[[Plants of the World Online]]", publisher="Royal Botanic Gardens, Kew", --postscript = 'none', }, customArgs = { exclude = "id,authority,family,genus,species,1", baseURL = "http://powo.science.kew.org/taxon/", searchStr ="urn:lsid:ipni.org:names:", defaultSuffix = "", defaultTitle = "Plants of the World Online" } --id = function(id) return p.genericIdCitation (frame, title, url)}--[[ http://powo.science.kew.org/taxon/urn:lsid:ipni.org:names:30003057-2 ]]data.POWO.id = function(id) local id = data.POWO.getValidID() if not id then return data.POWO.error() end local title = id -- as default value local url = data.POWO.customArgs['baseURL'] .. data.POWO.customArgs['searchStr'] .. id return title, url enddata.POWO.family = function(family) local title = addAuthority(family) local id = templateArgs['id'] if not id then return data.POWO.error() end local url = data.POWO.customArgs['baseURL'] .. data.POWO.customArgs['searchStr'] .. id return title, url enddata.POWO.genus = function(genus) local title = addAuthority("''" .. genus .. "''") local id = data.POWO.getValidID() if not id then return data.POWO.error() end local url = data.POWO.customArgs['baseURL'] .. data.POWO.customArgs['searchStr'] .. id return title, url enddata.POWO.species = function(genus,species) local title = addAuthority("''" .. genus .. " " .. species .. "''") local id = data.POWO.getValidID() if not id then return data.POWO.error() end local url = data.POWO.customArgs['baseURL'] .. data.POWO.customArgs['searchStr'] ..id return title, url enddata.POWO.getValidID = function() local id = templateArgs['id'] if id then return string.gsub( id, "urn:lsid:ipni.org:names:", "") -- don't want this twice end return nilenddata.POWO.error = function() return '<span style="color:red">Requires id and one of title, family, genus or species parameters</span>'end--[[Gouda, E.J., Butcher, D. & Gouda, C.S. (cont.updated) Encyclopaedia of Bromeliads, Version 4. http://bromeliad.nl/encyclopedia/ Utrecht University Botanic Gardens]]data.bromeliad = { citationArgs = { last1="Gouda", first1="E.J.", last2="Butcher", first2="D.", last3="Gouda", first3="C.S", website="[[Encyclopaedia of Bromeliads]]", version="Version 4", publisher="Utrecht University Botanic Gardens", --postscript = 'none', }, customArgs = { exclude = "id,authority,family,genus,species,list,1", baseURL = "https://bromeliad.nl/", searchStr ="encyclopedia/index.php?find=", defaultSuffix = "", defaultTitle = "Encyclopaedia of Bromeliads, Version 4" } --id = function(id) return p.genericIdCitation (frame, title, url)}--[[ https://bromeliad.nl/encyclopedia/index.php?find=Hylaeaicum ]]data.bromeliad.search = function(search) local title = search -- as default value local url = data.bromeliad.customArgs['baseURL'] .. data.bromeliad.customArgs['searchStr'] .. search return title, url end--[[ http://bromeliad.nl/species/Bromeliaceae ]]data.bromeliad.taxon = function(taxon) local title = addAuthority(taxon) -- as default value local url = data.bromeliad.customArgs['baseURL'] .. "species/" .. taxon return title, url end--[[ genus ]]data.bromeliad.genus = function(genus) local title = addAuthority("''" .. genus .. "''") -- as default value local url = data.bromeliad.customArgs['baseURL'] .. "species/" .. genus if templateArgs['list'] == "species" then url = data.bromeliad.customArgs['baseURL'] .. "encyclopedia/brome.php?action=showSpeciesIndex&name=" .. genus .. "&flags=" end return title, url end--[[ ]]data.bromeliad.species = function(genus, species) local title = addAuthority("''" .. genus .. " " .. species .. "''") -- as default value local url = data.bromeliad.customArgs['baseURL'] .. "species/" .. genus .. "/" .. species return title, url end--[[ https://bromeliad.nl/encyclopedia/brome.php?action=showTaxon&id=10093 ]]data.bromeliad.id = function(id) local title = id -- as default value local url = data.bromeliad.customArgs['baseURL'] .. "encyclopedia/brome.php?action=showTaxon&id=" .. id return title, url end--[[GRIN Cite as: USDA, Agricultural Research Service, National Plant Germplasm System. 2021. Germplasm Resources Information Network (GRIN Taxonomy). National Germplasm Resources Laboratory, Beltsville, Maryland. URL: https://npgsweb.ars-grin.gov/gringlobal/taxon/taxonomyfamily?type=tribe&id=1571. Accessed 27 October 2021. Family record: https://npgsweb.ars-grin.gov/gringlobal/taxon/taxonomyfamily?id=440 Genus list: https://npgsweb.ars-grin.gov/gringlobal/taxon/taxonomygenuslist?id=440&type=family Subfamily record: https://npgsweb.ars-grin.gov/gringlobal/taxon/taxonomyfamily?type=subfamily&id=1507 Genus list: https://npgsweb.ars-grin.gov/gringlobal/taxon/taxonomygenuslist?id=3265&type=subfamily Tribe record: https://npgsweb.ars-grin.gov/gringlobal/taxon/taxonomyfamily?type=tribe&id=1551 (Millettieae) Genus list: https://npgsweb.ars-grin.gov/gringlobal/taxon/taxonomygenuslist?id=1551&type=tribe Subtribe record: https://npgsweb.ars-grin.gov/gringlobal/taxon/taxonomyfamily?type=subtribe&id=1507 Genus list: https://npgsweb.ars-grin.gov/gringlobal/taxon/taxonomygenuslist?id=1507&type=subtribe Genus record: https://npgsweb.ars-grin.gov/gringlobal/taxon/taxonomygenus?id=191 (Genus Adenodolichos Harms) Species list: https://npgsweb.ars-grin.gov/gringlobal/taxon/taxonomyspecieslist?id=191&type=genus Species record: https://npgsweb.ars-grin.gov/gringlobal/taxon/taxonomydetail?id=489203 ( Adenodolichos paniculatus) ]]data.GRIN = { citationArgs = { website="[[Germplasm Resources Information Network]] (GRIN)", publisher="[[Agricultural Research Service]] (ARS), [[United States Department of Agriculture]] (USDA)", --postscript = 'none', }, customArgs = { exclude = "id,authority,family,genus,species,1", baseURL = "https://npgsweb.ars-grin.gov/gringlobal", searchStr ="/taxon/taxonomydetail?", -- for species record defaultSuffix = "", defaultTitle = "GRIN-Global" } --id = function(id) return p.genericIdCitation (frame, title, url)}data.GRIN.id = function(id) local title = data.GRIN.customArgs['defaultTitle'] .. ' ' .. id local url = data.GRIN.customArgs['baseURL'] .. data.GRIN.customArgs['searchStr'] .. id return title, url end-- IPNI--→ "Meconopsis Vig." International Plant Names Index (IPNI). Royal Botanic Gardens, Kew.--- https://www.ipni.org/n/30149252-2--- as {{IPNI |id=30149252-2 |taxon=((Meconopsis |authority=Vig.))}} data.IPNI = { citationArgs = { website="[[International Plant Names Index]] (IPNI)", publisher="Royal Botanic Gardens, Kew", --postscript = 'none', }, customArgs = { exclude = "id,authority,family,genus,species,1", baseURL = "https://www.ipni.org", searchStr ="/n/", defaultSuffix = "", defaultTitle = "IPNI" } --id = function(id) return p.genericIdCitation (frame, title, url)}data.IPNI.id = function(id) local title = id local url = data.IPNI.customArgs['baseURL'] .. data.IPNI.customArgs['searchStr'] .. id return title, url enddata.IPNI.species = function(genus, species) return data.IPNI.taxon(genus .. " " .. species, "TITLE_ITALICS") enddata.IPNI.genus = function(genus) return data.IPNI.taxon(genus, "TITLE_ITALICS") enddata.IPNI.taxon = function(taxon, italics) local title = taxon if italics then title = "''" .. title .. "''" end title = addAuthority(title)--[[ if templateArgs['authority'] then title = title .. " " .. templateArgs['authority'] title = string.gsub( title, "(.*%.)$", "((%1))") -- if authority ends in "." enclose ((title)) to prevent removal end ]] local url = data.IPNI.customArgs['baseURL'] .. data.IPNI.customArgs['searchStr'] .. templateArgs['id'] return title, url end--[[World Flora Online http://www.worldfloraonline.org/taxon/wfo-4000012284 -- id]]data.WFO = { citationArgs = { website="[[World Flora Online]]", --publisher="Missouri Botanical Gardens", --postscript = 'none', }, customArgs = { exclude = "id,family,genus,species,authority,1", baseURL = "http://www.worldfloraonline.org", searchStr ="/taxon/wfo-", -- not strictly search string defaultSuffix = "", --defaultTitle = "World Flora Online" defaultTitle = "An Online Flora of All Known Plants" }}data.WFO.id = function(id)--[[ http://www.worldfloraonline.org/taxon/wfo-4000012284 ]] local title = id local url = data.WFO.customArgs['baseURL'] .. data.WFO.customArgs['searchStr'] .. id return title, url enddata.WFO.family = function(family) local title = addAuthority(family) local url = data.WFO.customArgs['baseURL'] .. data.WFO.customArgs['searchStr'] .. templateArgs['id'] return title, url enddata.WFO.genus = function(genus) local title = addAuthority("''" .. genus .. "''") local url = data.WFO.customArgs['baseURL'] .. data.WFO.customArgs['searchStr'] .. templateArgs['id'] return title, url enddata.WFO.species = function(genus,species) local title = addAuthority("''" .. genus .. " " .. species .. "''") local url = data.WFO.customArgs['baseURL'] .. data.WFO.customArgs['searchStr'] .. templateArgs['id'] return title, url enddata.WFO.error = function() return "Requires id and title parameters"enddata.Tropicos = { citationArgs = { website="[[Tropicos]]", --publisher="Missouri Botanical Gardens", --postscript = 'none', }, customArgs = { exclude = "id,1", baseURL = "http://legacy.tropicos.org/Name/", searchStr ="", defaultSuffix = "", defaultTitle = "Tropicos" }}data.Tropicos.id = function(id)--[[ hhttp://legacy.tropicos.org/Name/100444532 ]] local title = id local url = data.Tropicos.customArgs['baseURL'] .. data.Tropicos.customArgs['searchStr'] .. id return title, url enddata.Tropicos.error = function() return "Requires id and title parameters"enddata.FNA = { citationArgs = { website="[[Flora of North America]]", --publisher="http://www.efloras.org", --postscript = 'none', }, customArgs = { exclude = "id,1", baseURL = "http://www.efloras.org/florataxon.aspx", searchStr ="?flora_id=1&taxon_id=", defaultSuffix = "", defaultTitle = "Flora of North America" } --id = function(id) return p.genericIdCitation (frame, title, url)}data.FNA.id = function(id)--[[ http://www.efloras.org/florataxon.aspx?flora_id=1&taxon_id=125683 ]] local title = id local url = data.FNA.customArgs['baseURL'] .. data.FNA.customArgs['searchStr'] .. id return title, url enddata.FNA.error = function() return "Requires id and title parameters"end-- ATRP: Australian Tropical Rainforest Plants data.ATRP = { citationArgs = { website="[[Australian Tropical Rainforest Plants]]", publisher="[[Commonwealth Scientific and Industrial Research Organisation]] (CSIRO)", version = "Edition 8", year = 2020, --postscript = 'none', last1= "Zich", first1="F. A.", last2= "Hyland", first2= "B. P. M.", ['author2-link']="Bernard Hyland", last3= "Whiffin", first3= "T.", last4= "Kerrigan", first4= "R.A.", --['display-authors']=3, }, customArgs = { exclude = "genus, species,authority, id,1", baseURL = "https://apps.lucidcentral.org/rainforest", searchStr ="/text/entities/", defaultSuffix = ".htm", defaultTitle = "[[Australian Tropical Rainforest Plants]]" } --id = function(id) return p.genericIdCitation (frame, title, url)}data.ATRP.species = function(genus,species)--[[ https://apps.lucidcentral.org/rainforest/text/entities/buckinghamia_celsissima.htm ]] local title = addAuthority("''" .. genus .. " " .. species .. "''") --"''" .. genus .. " " .. species .. "''" local url = data.ATRP.customArgs['baseURL'] .. data.ATRP.customArgs['searchStr'] .. genus .. "_" .. species .. data.ATRP.customArgs['defaultSuffix'] return title, url enddata.ATRP.error = function() return "Requires genus and species parameters"end-- ============================= Mosses (Goffinet's site) =================================================-- for species in taxon; for species assessments, us {{cite iucn}}-- https://bryology.uconn.edu/classification/#Hypnanae-- https://bryology.uconn.edu/classification/#Bryalesdata.goffinet = { citationArgs = { first1="B.", last1="Goffinet", first2="W.R.", last2="Buck", website="Classification of extant moss genera" --publisher="[[xxx]]" }, customArgs = { exclude="family,genus,species,taxon,id,1", baseURL = "https://bryology.uconn.edu/classification/", searchString = "#", searchSuffix = "", defaultSuffix = "", defaultTitle="Classification of the Bryophyta" } }data.goffinet.genus = function(genus) return data.goffinet.taxon(genus, "GENUS") enddata.goffinet.family = function(family) return data.goffinet.taxon(family, "FAMILY") enddata.goffinet.order = function(order) return data.goffinet.taxon(order, "ORDER") enddata.goffinet.taxon = function(taxon, rank) local title = firstToUpper(taxon) if rank == "GENUS" then title = "''" .. title .. "''" end if not (rank == "GENUS" or rank == "FAMILY") then -- upper case anchors for orders and above if taxon ~= "Bryanae" and taxon ~= "Hypnanae" and taxon ~= "Bryales" and taxon ~= "Bryidae" then -- check for exceptions (inconsistencies at website) taxon = taxon:upper() end end local url = data.goffinet.customArgs['baseURL'] .. data.goffinet.customArgs['searchString'] .. taxon .. data.goffinet.customArgs['searchSuffix'] return title, urlend --[[ AlgaeBase (old) taxonomy browser url (Volvox) = https://www.algaebase.org/browse/taxonomy/?id=6898 taxonomy browser url (Volvox) = https://www.algaebase.org/browse/taxonomy/?#6898 genus article url (Volvox) = https://www.algaebase.org/search/genus/detail/?genus_id=43497 (different id) genus article url (Torodinium)= https://www.algaebase.org/search/genus/detail/?genus_id=44698 Please cite this record as: M.D. Guiry in Guiry, M.D. & Guiry, G.M. 2020. AlgaeBase. World-wide electronic publication, National University of Ireland, Galway. http://www.algaebase.org; searched on 10 May 2020. ]]data.AlgaeBase = { citationArgs = { website="[[AlgaeBase]]", ['editor1-last']="Guiry", ['editor1-first']="M.D.", ['editor2-last']="Guiry", ['editor2-first']="G.M.", publisher="National University of Ireland, Galway", }, customArgs = { exclude = "id,1,genus_id,species_id,spid,genid", baseURL = "https://www.algaebase.org/", --searchStr ="browse/taxonomy/?id=", (old) searchStr ="browse/taxonomy/?#", defaultSuffix = "", defaultTitle = "AlgaeBase" }}data.AlgaeBase.id = function(id)--[[ https://www.algaebase.org/browse/taxonomy/?id=6898 (id for taxonomy page) ]] local title = id local url = data.AlgaeBase.customArgs['baseURL'] .. data.AlgaeBase.customArgs['searchStr'] .. id return title, url enddata.AlgaeBase.genid = function(genid)--[[ https://www.algaebase.org/search/genus/detail/?genus_id=43497 (different id for genus page) ]] local title = genid local url = data.AlgaeBase.customArgs['baseURL'] .. "search/genus/detail/?genus_id=" .. genid return title, url enddata.AlgaeBase.spid = function(spid)--[[ https://www.algaebase.org/search/species/detail/?species_id=52713 (id for species page) ]] local title = spid local url = data.AlgaeBase.customArgs['baseURL'] .. "search/species/detail/?species_id=" .. spid return title, url enddata.AlgaeBase.error = function() return "Requires id and title parameters"end--================= Viruses =========data.ictv = { citationArgs = { website="ictv.global", --['editor1-last']="xx", ['editor1-first']="xx", --['editor2-last']="xx", ['editor2-first']="xx", author="International Committee on Taxonomy of Viruses (ICTV)", }, customArgs = { exclude = "id,1", baseURL = "https://ictv.global/taxonomy/", searchStr ="taxondetails?taxnode_id=", defaultSuffix = "", defaultTitle = "Taxonomy Browser" }}data.ictv.id = function(id)--[[ https://ictv.global/taxonomy/taxondetails?taxnode_id=202308917&taxon_name=Campanilevirus%20YC (for species Campanilevirus YC) https://ictv.global/taxonomy/taxondetails?taxnode_id=202308917 (also works with just the id) ]] local title = id local url = data.ictv.customArgs['baseURL'] .. data.ictv.customArgs['searchStr'] .. id return title, url enddata.ictv.error = function() return "Requires id and title parameters"end--############################## General Functions ########################################local function getArgs (frame, args) local parents = mw.getCurrentFrame():getParent() for k,v in pairs(parents.args) do --check content if v and v ~= "" then args[k]=v --parents.args[k] end end for k,v in pairs(frame.args) do --check content if v and v ~= "" then args[k]=v end endendlocal function initialise(frame, sourceDB) target=sourceDB templateArgs = sourceDB.citationArgs -- get custom arguments for target (fishbase, cof etc getArgs(frame, templateArgs) -- get template arguments from parent frame and frane local url = (target.customArgs['baseURL'] or "") .. (target.customArgs['defaultSuffix'] or "") local title = target.customArgs['defaultTitle'] or "" return title, urlend -- moved up top for scopelocal function firstToUpper2(str) return (str:gsub("^%l", string.upper))end-- clear template arguments that won't be recognised by {{cite web}}local function clearCustomArgs() local excludeTable = { 'genus', 'species', 'subspecies', 'family', 'order', 'taxon', 'id', 'search' , 'citation', 1, 2, 3, 4 } -- add defaults ? if target.customArgs['exclude'] then local customTable = mw.text.split (target.customArgs['exclude'] , "%s*,%s*"); for k,v in pairs(customTable) do table.insert (excludeTable, v ) end end for k,v in pairs(excludeTable) do if tonumber (v) then v = tonumber (v) --convert positional parameters (numbers as string) to a number end templateArgs[v]=nil --clear content endend-- function handling the cite web templatep.citeWeb = function(frame, title, url) -- set url and title if not provided (template parameters override above) if not templateArgs['url'] and url then templateArgs['url']= url end if not templateArgs['title'] and title then templateArgs['title'] = title end clearCustomArgs()--blank template parameters not for cite web local citeTemplate = 'cite web' -- use Template:Cite web unless specified --if target.citeTemplate then citeTemplate = target.citeTemplate end return frame:expandTemplate{ title = citeTemplate, args = templateArgs }end-- p.CiteBook-- for reasons of consisitency within BioRef/FishRef the title parameter is the section-title of {{cite book}}p.citeBook = function(frame, title, url, chapterParams) -- very much a msw3 function --if (1==1) then return templateArgs['title'] end -- set url and title if not provided (template parameters override above) if not templateArgs['url'] and url then templateArgs['url']= url if target.GoogleBooks then templateArgs['url'] = target.GoogleBooks['baseURL'] .. target.GoogleBooks['id'] .. (target.GoogleBooks['defaultPage'] or "&pg=PP1") end end if not templateArgs['title'] and title then -- templateArgs['title'] = title end if templateArgs['title'] ~= title or templateArgs['taxon-title'] then -- do we have a section title provided templateArgs['section'] = templateArgs['title'] -- chapter/section title passed as title parameter templateArgs['title'] = title -- the work is the book title given in the source data if target.GoogleBooks then templateArgs['section-url'] = target.GoogleBooks['baseURL'] .. target.GoogleBooks['id'] local pageSuffix = target.GoogleBooks['defaultPage'] or "" if templateArgs['page'] or templateArgs['gb-page'] then pageSuffix = "&pg=PT" .. (templateArgs['gb-page'] or templateArgs['page'] ) end local searchStr = "" -- quoted search {{#if:{{{text|{{{dq|}}}}}}|&dq={{urlencode:{{{text|{{{dq|}}}}}}}}}} if templateArgs['q'] then searchStr = "&q=" .. mw.text.encode( templateArgs['q'] ) end -- search #if:{{{keywords|{{{q|}}}}}}|&q={{urlencode:{{{keywords|{{{q|}}}}}}}}}} if templateArgs['dq'] then searchStr = "&dq=" .. mw.text.encode( templateArgs['dq'] ) end templateArgs['section-url'] = templateArgs['section-url'] .. pageSuffix .. searchStr templateArgs['url'] = nil -- no need for second link to google books end -- if the chapter/section is linked, we can link the main book chapter differently if target.customArgs['altTitle'] then -- if we are using a chapter/section, we can wikilink the book title templateArgs['title'] = target.customArgs['altTitle'] -- alternative to allow wikilink elseif target.customArgs['altURL'] then templateArgs['url'] = target.customArgs['altURL'] end end -- end if using supplied title for chapter/section clearCustomArgs()--blank template parameters not for cite web local citeTemplate = 'cite book' -- use Template:Cite web unless specified --if target.citeTemplate then citeTemplate = target.citeTemplate end return frame:expandTemplate{ title = citeTemplate, args = templateArgs }end-- common function for genus and specieslocal function getGenusSpecies() --TODO standardise genus species handling local genus, species, subspecies if (templateArgs['genus'] or templateArgs[2] ) then genus = templateArgs['genus'] or templateArgs[2] genus = firstToUpper(mw.text.trim(genus)) end if (templateArgs['species'] or templateArgs[3] ) then species = templateArgs['species'] or templateArgs[3] species = mw.text.trim(species) end if (templateArgs['subspecies'] or templateArgs[4] ) then subspecies = templateArgs['subspecies'] or templateArgs[4] subspecies = mw.text.trim(subspecies) end return genus, species, subspeciesend--#################### MSW3 -- uses cite bookp.MSW3 = function(frame) local msw = require('Module:FishRef/MSW') initialise(frame, msw.MSW3) return msw.MSW3.main(frame,templateArgs)endp.MSW3merged = function(frame) local data = require('Module:FishRef/MSW') return p._main(frame, data.MSW3)endp.MSW3_standalone = function(frame) local data = require('Module:FishRef/MSW') initialise(frame, data.MSW3) local url = target.CustomArgs['baseURL'] if templateArgs['title'] and templateArgs['id'] then templateArgs['chapter-url']= url .. target.CustomArgs['searchStr'] .. templateArgs['id'] templateArgs['chapter'] = templateArgs['title'] templateArgs['title'] = target.CustomArgs['bookTitle'] if templateArgs['page'] then templateArgs['url'] = target.CustomArgs['googleBooksURL'] .. templateArgs['page'] else --return "Page number for google books required" end elseif templateArgs['order'] then templateArgs['chapter'] = "Order " .. templateArgs['order'] local chapter = target.chapters[templateArgs['order']] for k,v in pairs(chapter) do -- add chapter specific parameters templateArgs[k] = v end templateArgs['chapter-url']= url .. target.CustomArgs['searchStr'] .. templateArgs['id'] templateArgs['url']= target.CustomArgs['googleBooksURL'] .. templateArgs['page'] if templateArgs['pages'] and templateArgs['page'] then templateArgs['page'] = nil end else -- default output templateArgs['url']= target.CustomArgs['googleBooksURL'] .. "1" -- default to book templateArgs['url']= url end -- using cite book clearCustomArgs()--blank template parameters not for cite web return frame:expandTemplate{ title = 'cite book', args = templateArgs }end--########################### Functions for access (using invoke) ##############################################--================ Fishbase, Catalog of Fishes (cof) ================p.fishbase = function(frame) return p._main(frame, data.fishbase) endp.cof = function(frame) return p._main(frame, data.cof) end p.fotw5 = function(frame) return p._main(frame, data.fotw5) end --=================== ASW6, AmphibiaWeb, ReptileDBp.reptileDB = function(frame) return p._main(frame, data.reptileDB) endp.ASW6 = function(frame) return p._main(frame, data.ASW6) endp.amphibiaweb = function(frame) return p._main(frame, data.amphibiaweb) end--=========== Birdsp.HBWa = function(frame) return p._main(frame, data.HBWalive) endp.HBWalive = function(frame) return p._main(frame, data.HBWalive) endp.IOC = function(frame) return p._main(frame, data.IOC) endp.BOW = function(frame) return p._main(frame, data.BOW) end--======= Mammalsp.asm = function(frame) return p._main(frame, data.asm) end--======= Plantsp.WFO = function(frame) return p._main(frame, data.WFO) endp.POWO = function(frame) return p._main(frame, data.POWO) end-- MSW3 has custom handling (see above)--=========== Otherp.fossilworks = function(frame) return p._main(frame, data.fossilworks) endp.worms = function(frame) return p._main(frame, data.WoRMS) endp.WoRMS = function(frame) return p._main(frame, data.WoRMS) endp.col = function(frame) return p._main(frame, data.col) end --fallback = function() return "hello" end--#########################################################p.main = function(frame) local source = mw.text.trim(frame.args[1]) --TODO force to lower case and use lower case for all functions above if source == "MSW3" then return p.MSW3(frame) end if source == "ref" or source == "reference" then source = "Reference" end -- aliases if source == "Reference" then return p.Reference(frame) end if source == "HBWa" then source = "HBWalive" end -- aliases if source == "powo" then source = "POWO" end -- aliases if source == "wfo" then source = "WFO" end -- aliases if source == "mdd" then source = "asm" end -- aliases --return p[source]['test'] if source == "fishbase" -- unnecessary? or source == "cof" or source == "fotw5" or source == "Fotw5" or source == "reptileDB" or source == "amphibiaweb" or source == "BOW" or source == "ASW6" or source == "asm" or source == "HBWalive" or source == "HBWa" or source == "fossilworks" or source == "WoRMS" or source == "worms" or source == "POWO" or source == "powo" or source == "WFO" or source == "wfo" or source == "AlgaeBase" -- and so on then return p._main(frame,data[source]) else -- -- is there a point in the default if it needs the named object/table? return p._main(frame,data[source]) endendp._main = function(frame, source) --TODO in modular version source will be provided in frame arguments --local source = mw.getCurrentFrame():getParent().args[1] local chapterParams = {} -- used for cite book (only MSW3 at moment) if not source then return "Error: unrecognised source." end local title, url = initialise(frame, source) --taxon related parameters local genus, species, subspecies if source.db ~= "col" then -- col legacy uses positional parameters differently genus, species, subspecies = getGenusSpecies() end local family = templateArgs['family'] local order = templateArgs['order'] local taxon = templateArgs['taxon'] local id = templateArgs['id'] --id related parameters local spid = templateArgs['spid'] or templateArgs['species_id'] local genid = templateArgs['genid'] or templateArgs['genus_id'] local citation = templateArgs['citation'] local collection = templateArgs['collection'] or templateArgs['collection_no'] local search = templateArgs['search'] local mode, value -- the functions if genus and species and source.species then title, url = source.species(genus,species,subspecies) else -- functions with just their own name as parameter if id then mode = "id"; value = id elseif taxon then mode = "taxon"; value = taxon elseif order then mode = "order"; value = order elseif family then mode = "family"; value = family elseif genus then mode = "genus"; value = genus elseif spid then mode = "spid"; value = spid elseif genid then mode = "genid"; value = genid elseif search then mode = "search"; value = search elseif citation then mode = "citation"; value = citation elseif collection then mode = "collection"; value = collection else -- no suitable parameter (use default page) if source.default then title, url, chapterParams = source.default(title, url) end end end if mode then if source[mode] then title, url, chapterParams = source[mode](value) elseif data.default[mode] then title, url, chapterParams = data.default[mode](value, source) else if source.error then return source.error() end -- custom error message return "Error: parameter not supported for this source" .. " (" .. mode .. ")" end else -- if no mode then use the default title and url set by initialize() end if source.citeTemplate == "Cite book" then return p.citeBook(frame, title, url, chapterParams) end return p.citeWeb(frame, title, url) end -- End the function.p.Reference = function(frame) local refs = require('Module:FishRef/refs') getArgs(frame, templateArgs) if templateArgs[2] then local reference = mw.text.trim(templateArgs[2]) if reference ~= "" and refs[reference] then if templateArgs['pages'] then refs[reference] = refs[reference]:gsub("}}", "|pages="..templateArgs['pages'].."}}") refs[reference] = refs[reference]:gsub("|pages=[^|{}%[%]]*(|[^|{}}%[%]]*|pages=)", "%1") end if templateArgs['reftags'] == "yes" then refs[reference] = '<ref name=' .. templateArgs[2] ..'>' .. refs[reference] .. '</ref>' end if templateArgs['expand'] and templateArgs['expand']=='no' or templateArgs['raw'] then return refs[reference] else return frame:preprocess(refs[reference]) end else return 'Reference not found: "' .. templateArgs[2] .. '"' end end return "Reference parameter missing."end -- End the function.-- All modules end by returning the variable containing its functions to Wikipedia.return p